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+======Oncoarray Consortium Wiki: Dartmouth Edition======
- ===== Genotype Calling ===== Information regarding genotype calling at Dartmouth can be found {{:genotype_calling.docx|here.}} ----
+These pages are for sharing information among the consortia genotyping the Illumina Oncoarray chip.
+There are various [[Oncoarray:analysis_groups|groups involved in this analysis]]
+----
+===== Genotype Calling =====
+Information regarding genotype calling at Dartmouth can be found {{:genotype_calling.docx|here.}}
+----
 ===== Positions/Strands =====
 This {{:onco_positions_strands.zip|list}} has the strands the TOP alleles from the Oncoarray chip refer to. Most strands were determined by blasting the probe sequence against 1KG sequencing. Some unknown strands were changed to reflect the alleles of the 1KG variant matched to the SNP. Some ambiguous SNPs were flipped to match the expected frequency of the 1KG. Some positions for SNPs with rs numbers were updated to match dbSNP and the probe sequence was confirmed to be in the amended position. The positions for Indels matched to 1KG variants have been amended to match the 1KG system of numbering (i.e. one less than the manifest position.)

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